Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015900841.1_cds_XP_016450868.1_45274
CDS Infomation

[gene=LOC107775633] [db_xref=GeneID:107775633] [protein=transcription factor HBP-1b(c38)-like isoform X2] [protein_id=XP_016450868.1] [location=complement(join(33702..33854,33945..34190,34272..34543,34636..34693,34781..34858,35467..35526,35634..35711,36782..37021,37676..37752,37879..37982,38292..38383))] [gbkey=CDS]
Sequence

ATGCAAGCTTTCAAAGCAGCAGTATTACCAGCTGTTACTCTTAATAATAATAACAATTCT
AATATGTATTGCCACTCATCTTTTTACCTCAGAGGTGATGAAGCTAGTAGACATGCAGCA
GCACGTTTTGCTGATATTGGAGAGCTTGAACAGTCTACAGGATTTCCTCAAGAAGATGCT
GTTGATTTAAGCAGAATCTATGGTGAGATGAGGCCAAACAATGTTGCTGTTGTTTCTTCT
AATAATAACTTGCATTTTGGTGAACTTAATACGAGTATAGGGTCAACGGAAATGGGGTCA
TCAGAAACAGGAGGGGTGGAAGCAGGGGGAAGGTTTATGTTGCACAAGGCACAAACAACA
ATGGTGGGTGGTGGTGGTGTAGTAGGTGGTGGTGCTGTGACTTTGGGAAATGGCCATTTT
GAGAATTGGGCTGATTCTGGCATTGCAGACCATAGCCACAGTCAGCAGACTGACACTTCC
ACAGATGTTGACACTGATGAAAGAAACCACCAGGGCCAAGGTGTTCAACATGGTGCATTA
ATGGCTGTGGACTCCATTGATCAGTCCAAAGTAAAGCATGGAGATCAGAAGACACTGCGC
AGGCTGGCTCAAAACCGAGAAGCTGCTAGGAAAAGTCGATTGAGGAAAAAAGCATATGTT
CAACAGCTGGAGACTAGTAGGCTCAAACTATCACAGTTAGAGCAGGAACTAAAACGAGCC
CGCCAACAGGGCATGTTTATTGCTAATGGATATGCGGGGGATCAGAGTCTTTCTGGTGGT
GGAAATGGGGCATTGGCATTTGACATGGATTATGCACGTTGGCTAGAAGACCATCAGCGA
CTTATCAGTGATCTCCGATCAGCTGTAAATTCTCACAGGGGAGATAATGAGCTGCGCCTA
CTTGTTGATGGAGTGATGTTACATTATGACGAAATATTCAAGTTAAAGAGTGTCGGAGCA
AAATCAGATGTTTTTCATATGCTGTCGGGCATGTGGAAGACTCCTGCGGAAAGGTGTTTC
ATGTGGTTGGGCGGATTTCGTTCTTCTGAGCTTCTAAAGATTCTTGGAAACCACCTTGAA
CCGTTGACAGAGCAGCAGCTCATGGGCATATGTAATTTGCAGCAGTCTTCTCAGCAGGCC
GAGGATGCCCTATCGCAGGGCATGGAAGCCCTGCAACAATCTCTTGTCGATACACTTTCA
TCAACTTCTCTTGGCCCTACTGGCTCTGGAAACGTAGCCGACTATATGGGGCAAATGGCA
ATCGCAATGGGCAAGCTTGCCACCCTTGAGAACTTCCTTTATCAGGCTGATCTTCTGAGA
CAACAAACTTTGCAACAATTGCATAGAATCTTGACCACTCGTCAAGCTGCTCGAGCCCTG
CTTGTTATAAGTGATTACATGTCAAGGCTTCGGGCACTCAGTTCGTTGTGGTTAGCACGC
CCCAAGGACCAACTCTAG

Peptide Sequence

PEP ID

XP_016450868.1
PEP Infomation

PREDICTED: transcription factor HBP-1b(c38)-like isoform X2 [Nicotiana tabacum]
Sequence

MQAFKAAVLPAVTLNNNNNSNMYCHSSFYLRGDEASRHAAARFADIGELEQSTGFPQEDA
VDLSRIYGEMRPNNVAVVSSNNNLHFGELNTSIGSTEMGSSETGGVEAGGRFMLHKAQTT
MVGGGGVVGGGAVTLGNGHFENWADSGIADHSHSQQTDTSTDVDTDERNHQGQGVQHGAL
MAVDSIDQSKVKHGDQKTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLSQLEQELKRA
RQQGMFIANGYAGDQSLSGGGNGALAFDMDYARWLEDHQRLISDLRSAVNSHRGDNELRL
LVDGVMLHYDEIFKLKSVGAKSDVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNHLE
PLTEQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSSTSLGPTGSGNVADYMGQMA
IAMGKLATLENFLYQADLLRQQTLQQLHRILTTRQAARALLVISDYMSRLRALSSLWLAR
PKDQL

Transcript Sequence

Gene sequence data has not been registered.